Schema Compare still showed excluded items (93759)

In the Schema Compare Options, I checked to exclude certain items (e.g. Ignore Extended Properties) but when the comparison finishes, the comparison scripts still show the ignored items.

If you notice from your comparison scripts, the excluded items are highlighted. The highlighting means that the info in the script is just for information and is not taking into account during compare. So everything you exclude will be highlighted and shown but not taken into account.