There are multiple factors, that may affect the final outcome. Before verifying what is causing discrepancies, please review SharePoint migration limitations, that outlined in this document: On Demand Migration Current - User Guide (quest.com)
In addition to that, the following factors may affect it:
Lastly, after the migration process, Microsoft is running an indexing process in the backend. We've observed delays of over 24 hours in reported statistics until actual sizes are reported.
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