From MNE 4.7.0.98 and above, there will be a new feature to allow MNE to specify which Office 365 SKU to be used for the assigning the license.
Here is information excerpt from the MNE 4.7.0.98 Release Notes:
Support for multiple Office 365 SKUs: MNE's Data Migration Wizard now supports Office 365 licensing when organizations leverage multiple O365 account SKUs. If a
Multiple AccountSkus error is received, then the Wizard has detected multiple accounts and requires that you specify one to use for this feature. The
Get-MsolAccountSku cmdlet can retrieve the
AccountSkuIds for all valid licenses. Review the list and determine the appropriate SKU for the current licensing operation. Then specify the SKU you want to use in this new program parameter in the [Exchange] section of Global Defaults or Task Parameters:
[Exchange] O365AccountSkuId=<YOUR_TENANT_NAME:SKU_PART_NUMBER> |
Please contact support to obtain this version of MNE