When migrating two separate libraries named "Documents" and "Shared Documents" to SharePoint Online, content from both libraries is migrated to a library named "Documents" with internal name "Shared Documents".
Expected result:
> Source library "Documents" migrated to target library "Documents"
Our development team is aware of this issue and is working towards a solution in a future release of Content Matrix / Essentials for Office 365.
As a temporary workaround, the following steps may be followed;
a) Migrate the content to a Classic SharePoint Site
b) Migrate the content to a Team Site (No Office 365) SharePoint Site
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