MMD terms may be duplicated and placed in the wrong hierarchy
To prevent this behavior, don't leverage column mappings on Managed Metadata Fields. Instead, ensure the internal names of List/Site columns in your destination are identical to the source - This avoids the need for column mappings.
Recommendation:
1) Ensure the Taxonomy Term Store in migrated to your destination with Taxonomy GUIDs retained.
2) Ensure the internal names of the site/list columns are identical to the source
3) In the migration job, de-select everything under "Managed Metadata" options in the job configuration
Note: If there are more than one MMD service applications in the source/target, then "Map Term Stores" option needs to be configured.
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