Is there a way to configure Toad to integrate PVCS version control in one schema and Toad's internal Team Coding enabled for all other schema's?
This capability is not available in the current release of Toad. The design of team coding in Toad with or without a third party software is as follows: When the Sever Side Object wizard is executed there are a few tables and roles created in the TOAD schema. All starting with the name "TC". These tables hold the information that user enters in the Settings and other windows of Team Coding. The limitation here is that because Toad only has one set of TC objects per database, it does not have the capability to configure Team Coding differently per schema in a single database.
Team Coding is configured per database and not schema.