Yes, to configure this option do the following:
1. Open the Main Menu,
2. Select Tools | Settings | Preferences | "Settings"
3. Check the "Restore folder permissions" check box and click Apply
"Restore folder permissions" - With this check box selected, Recovery Manager for Exchange restores mailbox and public folders along with their permissions stored in the source storage.
Note that Recovery Manager for Exchange cannot restore folder permissions that are exclusively stored in Active Directory.