WORKAROUND:
1. In Spotlight, go to Wait statistics drill-down.
2. Find out CLR wait types affected. (Can use the save as to export as .CSV and copy the names from Excel).
3. Go to default folder:
{Diagnostic Server Install Path}\Agent\conf\Package\sqlserver_spotlight
i.e.
"C:\Program Files\Quest Software\Diagnostic Server\Agent\conf\Package\sqlserver_spotlight"
4. Locate the file called "IdleWaits.txt" and save a backup file and then open it in Notepad.
5. Put the names in the list (one name per line returned) and save the file.
6. Restart the Diagnostic Server Service and see if that will ignore the CLR Wait Events from Performance report.
STATUS:
A fix is available in the latest version of Spotlight on SQL Server Enterprise which can be downloaded
here.