NOTE:
Other reasons for unexpected base images should be investigated prior to continuing with the information that follows below.
For more specifics on why unexpected base images are snapped and transferred, please take a look at this KB article:
Unexpected Base Images Created in AppAssure 5 or Rapid Recovery 6
In your system event logs, following trail of events will be found:
When the VMware Snapshot initiates with the quiescing option selected, it prevents the AppAssure filter drivers from accessing the AppAssure change log, and this condition forces changelogs to revert to base snapshot behavior.
More information on event ID 7036:
Event ID 7036 — Basic Service Operations
To resolve the issue of having random base images snapping for protected virtual agents, disable the quiescing option for those guests within the vmware hypervisor itself.
This link from VMware details further how the snapshot process works: Overview of virtual machine snapshots in vSphere (1015180)