Archive Shuttle Stage 2 Command Troubleshooting can be broken down in to a number of different commands, as outlined below:
CollectItemsForArchive Issues
EnableMailbox Issues
DisableMailbox Issues
ZapArchivePermissions Issues
AssignArchive Issues
RenameSourceArchive Issues
DisableOrphanedArchive Issues
FixShortcuts Issues
DeleteEVShortcut Issues
RevertPendingShortcuts Issues
WaitForImportFinished Issues
Office365DeleteShortcuts Issues
Office365RemoveLicense Issues